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Loman Lab Mock Community Experiments

Assemblies

Illumina Mock Community Draft References v1.0

Nanopore Assemblies (wtdbg2) v2.0 (March 2019)

Platform Zymo Extraction L e p Total bp Contigs N50 bs ef ec lm pa sc se sa Download
GRID EVEN BB 5000 3 23 53817383 1045 792510 Download (52M, 0187930229575079aca505965eae9e17)
.ctg.cns.fa
73.80 75.49 70.03 77.16 81.83 55.70 70.38 78.92
GRID EVEN BB 5000 3 17 54529227 989 139971 Download (53M, f55976b1e2c949b7f7bc5bd2483077b1)
.ctg.cns.fa
77.07 71.43 24.61 78.35 83.04 59.22 36.49 77.58
GRID EVEN BB 5000 3 21 54539745 1025 237874 Download (53M, 546d68af3baf14b0aebc1ba955c6de07)
.ctg.cns.fa
77.82 75.90 71.66 77.77 81.12 58.59 48.28 83.20
GRID EVEN BB 0 3 23 62160787 1373 151148 Download (60M, a9f4613ba8da436053c3a2c61658b81f)
.ctg.cns.fa
67.98 68.55 62.38 70.92 79.81 68.15 59.64 76.79
GRID EVEN BB 0 3 17 60523089 1143 121234 Download (59M, c0c20d0ce5d3fe555f710bd47dda130e)
.ctg.cns.fa
71.99 71.44 47.82 69.57 82.25 69.55 57.82 72.34
GRID EVEN BB 0 3 21 61898646 1259 148593 Download (60M, b7ff10ac981891435967c22d4f0b6132)
.ctg.cns.fa
65.85 72.02 58.86 71.65 79.78 71.11 38.79 77.50
GRID EVEN BB 5000 10 23 30453144 82 1890278 Download (30M, 04eb5990952fccb5deee287e95f3c49e)
.ctg.cns.fa
74.91 77.30 76.66 79.92 83.78 4.17 59.92 81.02
GRID EVEN BB 5000 10 17 30570482 165 1149864 Download (30M, e7af075a9329a9160037ff3854f4e147)
.ctg.cns.fa
63.79 75.42 31.90 77.10 83.87 4.17 66.91 78.45
GRID EVEN BB 5000 10 21 31270218 95 1770803 Download (31M, d5d120fd2b8f6654832c73d0bd3d0d82)
.ctg.cns.fa
77.55 74.97 73.22 63.20 81.51 4.17 54.31 82.51
GRID LOG BB 5000 3 23 18959041 658 129092 Download (19M, 333d63f7370f8094c53e62adab55b965)
.ctg.cns.fa
65.22 ? 3.45 16.56 66.38 13.23 3.09 ?
GRID LOG BB 5000 3 17 21092685 683 286442 Download (21M, 4883ae4a577c2de7bd6eff9a8d277790)
.ctg.cns.fa
64.93 ? 5.52 19.25 78.49 3.93 0.00 ?
GRID LOG BB 5000 3 21 20199449 654 186755 Download (20M, 3eaf9b6a2b0a8f0936dbc4b5acf5945b)
.ctg.cns.fa
66.01 ? 3.45 12.93 75.83 8.48 2.54 ?
GRID LOG BB 0 3 23 23716184 710 68203 Download (23M, f1ed02b158c4abba0bd0875cded82d09)
.ctg.cns.fa
65.70 ? 2.88 38.34 65.57 35.86 0.00 ?
GRID LOG BB 0 3 17 23960833 663 85207 Download (24M, 1952297011f7ba51f6da17412a020a96)
.ctg.cns.fa
66.41 ? 3.92 19.44 68.06 43.18 7.05 ?
GRID LOG BB 0 3 21 24727273 713 77022 Download (24M, 8551c3f1c90c0efaf4ca1b78b36b7856)
.ctg.cns.fa
67.55 ? 7.21 29.08 78.89 35.08 0.00 ?
PROM25 EVEN BB 5000 3 21 63611769 645 583090 Download (62M, ac52fcf93d354a09e2ac4c1bff584f46)
.ctg.cns.fa
74.89 69.51 46.55 72.73 78.40 69.41 47.55 75.45
PROM25 EVEN BB 5000 3 23 64946420 684 578022 Download (63M, 04986cccbf5ae608fa3e5b3e520a15ed)
.ctg.cns.fa
71.97 67.51 62.27 74.70 78.12 74.23 44.83 75.22
PROM25 EVEN BB 5000 3 17 59394299 526 364284 Download (58M, 0840f22e811992ea48cd61c389c29d0e)
.ctg.cns.fa
72.60 70.10 16.30 77.70 70.94 47.81 50.93 75.44
PROM25 EVEN BB 0 3 23 67202580 1052 227978 Download (65M, 3e91c9b322224ac026c063217abd2dce)
.ctg.cns.fa
53.32 57.38 59.82 69.62 53.16 70.96 35.34 71.66
PROM25 EVEN BB 0 3 17 60232139 909 233250 Download (59M, 22d9e8e5880c818cce43a840d92242ff)
.ctg.cns.fa
62.53 62.27 25.63 67.61 50.22 74.23 45.10 64.11
PROM25 EVEN BB 5000 10 23 48566302 545 810841 Download (47M, dead73b4088bd4267e3d1915ffd6f910)
.ctg.cns.fa
71.84 66.06 67.07 73.96 79.97 69.02 70.03 77.23
PROM25 EVEN BB 5000 10 21 49693923 609 521922 Download (48M, 0d1ee801feab98768dfd48ffdd3297de)
.ctg.cns.fa
73.84 70.06 56.38 74.17 78.45 70.88 54.31 76.35
PROM25 EVEN BB 5000 10 17 51166334 743 230029 Download (50M, a8d25bd552750c2e2bfc314c8c14dd0f)
.ctg.cns.fa
70.60 66.50 25.61 79.16 75.85 67.77 31.82 76.42
PROM25 LOG BB 5000 3 21 30117967 438 166293 Download (30M, cb8e0172a034cd358254776a65242299)
.ctg.cns.fa
68.31 ? 4.17 12.73 76.18 52.19 18.82 ?
PROM25 LOG BB 5000 3 23 29891586 464 143901 Download (29M, d60af16e3835fb3daea1fdeeb43e5736)
.ctg.cns.fa
66.61 ? 8.33 17.87 80.19 52.42 16.72 ?
GRID EVEN BB 5000 3 23 54320112 1042 793278 Download (53M, 2340d19c3d2dc2f63476cf0a9915d63d)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.19 99.63 90.54 98.91 99.68 53.84 98.68 99.41
GRID EVEN BB 5000 3 23 54320191 1042 793282 Download (53M, 795eba5f2158456675f9ab13f5951801)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.19 99.63 90.54 98.91 99.68 53.84 98.63 99.41
GRID EVEN BB 5000 3 23 54322372 1042 793378 Download (52M, dfbd0bab7ec124146d9773acb134ac3c)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
97.01 99.13 89.20 97.68 97.49 53.84 97.61 97.30
GRID EVEN BB 5000 3 23 54292632 1043 793977 Download (52M, 5029e553655fd11aa1b856ee9583083f)
.ctg.cns.racon-ont-2.fa
87.25 87.35 80.87 91.09 92.68 74.46 85.09 91.70
GRID EVEN BB 5000 3 23 54341132 1044 794092 Download (52M, dce375052684b30e02e1c8ad72766bd9)
.ctg.cns.racon-ont-1.fa
86.37 87.44 78.57 90.49 92.12 73.99 83.42 88.44
GRID EVEN BB 5000 3 21 55099095 1021 238883 Download (54M, 3bd829d389f5a1e0fd592d4ec0c10ce2)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.71 99.63 95.79 95.63 99.64 55.72 69.31 99.41
GRID EVEN BB 5000 3 21 55099013 1021 238883 Download (54M, 4fa0e229d2415a63095fd517389b0b26)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.71 99.63 95.79 95.63 99.64 55.72 69.31 99.41
GRID EVEN BB 5000 3 21 55101106 1021 238903 Download (53M, 32a999a7c3a1150b79e261b4a8356888)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
97.81 100.00 94.39 94.40 98.45 55.56 67.59 97.92
GRID EVEN BB 5000 3 21 55047349 1022 238504 Download (53M, 1b3beb1a4194e7bccf8e091f3d951194)
.ctg.cns.racon-ont-2.fa
89.02 88.85 85.99 87.66 93.54 74.46 62.41 90.70
GRID EVEN BB 5000 3 21 55075454 1022 238458 Download (53M, 12c43e618fdabea1151a38581c0da61d)
.ctg.cns.racon-ont-1.fa
88.49 86.22 82.67 84.22 93.18 74.93 58.97 90.52
GRID EVEN BB 5000 10 23 30542875 81 1898775 Download (30M, ea9bd4084d1b5556535f11a63093917d)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.75 99.63 98.93 99.45 99.68 1.64 81.10 99.19
GRID EVEN BB 5000 10 23 30542821 81 1898778 Download (30M, e635d42745f277276a1dab3f5d21522a)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.75 99.63 98.60 99.45 99.68 1.64 81.10 99.19
GRID EVEN BB 5000 10 23 30546163 81 1898931 Download (30M, 5a70601b6fe5df35025928e619b99593)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
97.87 98.61 93.41 98.22 97.38 2.69 80.18 98.46
GRID EVEN BB 5000 10 23 30515645 82 1896539 Download (30M, 5c26faf7af33b63fe4d3938c48cdc303)
.ctg.cns.racon-ont-2.fa
89.00 88.59 83.86 89.25 92.88 2.69 67.45 90.18
GRID EVEN BB 5000 10 23 30517938 82 1895913 Download (30M, ad57624d9caacb716074c026e29092cc)
.ctg.cns.racon-ont-1.fa
87.58 84.85 83.81 89.04 92.46 2.06 68.85 89.94
GRID EVEN BB 5000 10 21 31363104 93 1777618 Download (31M, f39cd4ffb31208c98ca5140f179b49a2)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.38 99.63 97.22 74.86 99.30 3.35 98.57 99.31
GRID EVEN BB 5000 10 21 31363334 93 1777622 Download (31M, aa3c46dade2945e5608f16562f284d2e)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.38 99.63 97.22 74.86 99.30 3.35 98.56 99.31
GRID EVEN BB 5000 10 21 31365333 93 1777762 Download (30M, 899ff2de1b1e7f0a05aad9e78b09f397)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
97.08 98.79 95.70 73.63 97.41 3.35 97.38 98.08
GRID EVEN BB 5000 10 21 31339153 95 1774672 Download (30M, cf3bc360a5eed2a61fbdd6de7ff62252)
.ctg.cns.racon-ont-2.fa
88.82 85.61 86.05 69.35 93.23 2.69 84.96 92.18
GRID EVEN BB 5000 10 21 31338818 95 1774617 Download (30M, 3368222d5bdea3edd87fe254e673d52a)
.ctg.cns.racon-ont-1.fa
88.09 84.85 84.83 67.29 92.93 2.69 84.12 90.12
PROM25 EVEN BB 5000 3 21 63907156 635 586994 Download (62M, 4081e7abd70a5df431f758ef0d9447bc)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.75 99.63 67.24 98.91 99.59 61.76 95.59 98.84
PROM25 EVEN BB 5000 3 21 63907521 635 586992 Download (62M, 0e4a487757a6ccd53711767bc2136ec4)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.75 99.63 67.24 98.91 99.54 61.76 95.51 98.84
PROM25 EVEN BB 5000 3 21 63902534 635 586975 Download (61M, bbcc3a72e48b9eac4529426b3f5cf263)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
97.94 98.51 67.24 97.81 98.74 61.76 92.15 97.90
PROM25 EVEN BB 5000 3 21 63947310 640 586165 Download (62M, c9dfc34a74806859ef9f7b8fd3911f87)
.ctg.cns.racon-ont-2.fa
84.60 84.03 56.90 86.14 91.73 60.03 81.58 90.51
PROM25 EVEN BB 5000 3 21 63981655 641 586148 Download (62M, 1e20c6c8191c5b43d95fa8a294b48ec7)
.ctg.cns.racon-ont-1.fa
83.88 81.83 56.90 84.44 87.99 60.03 78.15 89.67
PROM25 EVEN BB 5000 3 23 65327431 674 581702 Download (64M, 6388d753e9f4647a1d57c9c9daaf6336)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.66 99.63 84.29 99.45 99.68 60.89 98.56 99.41
PROM25 EVEN BB 5000 3 23 65327448 674 581702 Download (64M, c8f4ac736263bd0cd974d2c171934410)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.66 99.63 84.18 99.45 99.68 60.89 98.56 99.41
PROM25 EVEN BB 5000 3 23 65322359 674 581692 Download (63M, 75bb65558e81a9a8a5e1a8a305589a16)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
98.11 98.64 82.81 99.21 99.42 60.89 94.57 97.98
PROM25 EVEN BB 5000 3 23 65295709 676 580432 Download (63M, bacea449e9b5fe7f1ca220071a180d1a)
.ctg.cns.racon-ont-2.fa
83.55 84.28 71.79 87.10 90.39 61.76 80.40 88.68
PROM25 EVEN BB 5000 3 23 65330976 677 580539 Download (63M, a8fa146c6d02aea10aae06d1064dacbc)
.ctg.cns.racon-ont-1.fa
85.12 83.16 68.60 84.76 91.13 61.60 77.85 88.25
PROM25 EVEN BB 5000 10 23 48772205 544 813567 Download (48M, db90fd51958b6bd493b15f5cfc838037)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.75 99.63 97.61 99.45 99.46 52.12 98.12 99.23
PROM25 EVEN BB 5000 10 23 48772449 544 813576 Download (48M, d258e590d9f7d2f638a11d5a1bfe5f4c)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.75 99.63 97.61 98.91 99.46 52.12 97.77 99.23
PROM25 EVEN BB 5000 10 23 48766659 544 813456 Download (47M, 39df349ce9fca7a2c986b15a144de28d)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
98.40 98.89 96.00 97.68 98.89 53.84 96.21 97.36
PROM25 EVEN BB 5000 10 23 48713866 545 813109 Download (47M, bc0c6f304c6b735fd43ecd21ef051529)
.ctg.cns.racon-ont-2.fa
84.96 85.99 84.10 89.10 89.17 56.43 89.00 90.28
PROM25 EVEN BB 5000 10 23 48736979 545 813019 Download (47M, 7f033d2e54231c06a35d81e2fca321fc)
.ctg.cns.racon-ont-1.fa
83.92 82.44 81.54 83.94 90.34 54.70 84.33 89.25
PROM25 EVEN BB 5000 10 21 49908582 609 524772 Download (49M, 50a012c14abae1fbced7341e414f5725)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-2.fa
99.75 99.63 74.14 99.45 99.61 58.31 98.15 99.41
PROM25 EVEN BB 5000 10 21 49908852 609 524772 Download (49M, 739429c14d3f5a98368c21a5dcae0783)
.ctg.cns.racon-ont-2.medaka-ont-1.pilon-ill-1.fa
99.75 99.63 74.14 99.45 99.61 58.31 97.86 99.41
PROM25 EVEN BB 5000 10 21 49903892 609 524737 Download (48M, e1d6cc6b0e029c710841d340951ac680)
.ctg.cns.racon-ont-2.medaka-ont-1.fa
97.27 98.57 74.14 98.32 99.02 58.31 95.05 98.01
PROM25 EVEN BB 5000 10 21 49840200 609 524870 Download (48M, 45333aab44df920375a1f4564e579240)
.ctg.cns.racon-ont-2.fa
85.53 83.61 63.79 86.99 91.29 59.17 80.56 89.48
PROM25 EVEN BB 5000 10 21 49872786 609 524747 Download (48M, 1b14a30fdbe887ff2fa6622e0090a52e)
.ctg.cns.racon-ont-1.fa
84.71 81.43 61.21 86.76 89.12 59.17 59.11 88.70

Nanopore Assemblies (wtdbg2) v1.1 (October 2018)

Platform Zymo Extraction L e p Total bp Contigs N50 bs ef ec lm pa sc se sa Download
GridION EVEN BB 6000 5 19 35885997 532 1885600 Download (35M, 1f675539f7f62948ac4f716ef6f6d509)
GridION EVEN BB 6000 3 19 46511875 1087 874739 Download (45M, 41589da81b1357555b1289e45a5f935f)
GridION LOG BB 5000 5 17 14303353 297 712225 Download (14M, 836dd68a5902c0fbf8a708fecac2028e)
GridION LOG BB 5000 3 19 20067395 662 711259 Download (20M, a6d3affdde07852a1b9db7a0af2c5782)
GridION EVEN BB 5000 3 23 52068686 1183 547784 Download (51M, cff26f78d8e5bbb018b4f5d8f1792b70)
25PromethION EVEN BB 5000 5 19 59019891 543 464791 Download (57M, deda2a8b58ee470d4d404a270891d90a)
25PromethION EVEN BB 5000 3 19 63586872 675 443331 Download (62M, 404e549c3b60a5c66a59c822677163ed)
GridION EVEN BB 5000 3 20 53786934 1087 426910 Download (52M, 4409a350c6fafbb7f0f02b0abb9f49e4)
25r2PromethION EVEN BB 5000 3 19 62941931 668 406280 Download (61M, e4a55414f6e347fd4479b30b173cceef)
25PromethION EVEN BB 5000 3 21 65027643 799 402711 Download (63M, ce2b93810e480dbf5812cfde09680adc)
GridION EVEN BB 5000 3 21 52918893 1117 402539 Download (51M, 809c0e7ead964235a1a2bb08ac125695)
GridION EVEN BB 5000 3 21 52918893 1117 402539 Download (51M, 809c0e7ead964235a1a2bb08ac125695)
GridION LOG BB 5000 3 17 20301055 684 395974 Download (20M, b202077706694f69b5ad2b7d53421df2)
25r2PromethION EVEN BB 5000 3 21 64996779 752 386747 Download (63M, a7a6b07deb59b16278f61ab32bbc288a)
25PromethION EVEN BB 5000 3 17 60773227 609 346529 Download (59M, cfddaba55e75501eb940f8e4d3616425)
25PromethION EVEN BB 5000 3 23 66253418 797 339773 Download (64M, 94a419fd4152bfee1578d77b8009055c)
GridION EVEN BB 5000 5 17 44131655 939 324158 Download (43M, f3e63d30e1ef4f0e4dec0f93a064a14b)
PromethION EVEN BB 5000 3 19 48010616 1061 321850 Download (47M, 8d5d35878492a089b091ffa5a5ed4b51)
5k50PromethION EVEN BB 5000 3 19 59361888 917 272041 Download (58M, e35c3e14b431f898296f29451192c885)
GridION EVEN BB 6000 3 17 47211270 1125 267516 Download (46M, 57038015e22f216348c8a71129159609)
GridION LOG BB 5000 3 23 18905935 620 260518 Download (19M, 2d534eab1fd008f6cfabad40ec9d3820)
25PromethION LOG BB 0 3 19 31340123 489 247003 Download (31M, aac602671e9da569489145b1106e3f97)
5k50PromethION EVEN BB 5000 3 21 63000858 917 245443 Download (61M, 061ea99a967d971e8913e782761b2903)
25PromethION EVEN BB 5000 2 19 62893799 811 235907 Download (61M, fd05f63ca780c60fa22289bb19aa88c1)
GridION EVEN BB 5000 3 19 53787709 1066 233401 Download (52M, abc9816506dd953a1dbf0e730bada22f)
GridION EVEN BB 0 6 ? 51477095 1028 232805 Download (50M, 26a8036d6482686c5b7e446ee8e0c49d)
GridION LOG BB 0 3 23 24535804 744 211812 Download (24M, 2eff420315027fd95352b324616998e8)
25PromethION LOG BB 0 3 21 31628580 541 207053 Download (31M, 91a45406589fe88dc5b1d273bc37c9d8)
25PromethION EVEN BB 0 3 17 61940899 982 197171 Download (60M, d46f2298102bf88e455f4eaf72a28c05)
PromethION EVEN BB 5000 3 ? 50038394 1127 187121 Download (49M, db368c049c6206db737e9b1454bb0150)
25PromethION LOG BB 0 3 23 31376552 568 177759 Download (31M, 76b65fef1d75abbc32d9282e1d1c89e6)
25PromethION EVEN BB 0 3 19 64486628 1181 167237 Download (63M, 552d8e136498d2ca3348ffec4938ce54)
25PromethION EVEN BB 0 3 21 66762129 1221 164895 Download (65M, b6e7551b7173ba767f4ab53c6e5d8f0b)
25PromethION LOG BB 5000 3 19 29868125 486 162810 Download (29M, 85d9752637643195fccf5bac1610248e)
GridION EVEN BB 5000 3 17 54430923 1047 161944 Download (53M, 553955c7e788ef0d1f261392267345d9)
25PromethION EVEN BB 0 3 23 69199522 1230 159664 Download (67M, 65f5e67add6856a48e9e7693825a16a7)
GridION EVEN BB 0 5 17 57002723 1084 158186 Download (55M, fccb6b649afc6ac0e84a673df7361222)
GridION EVEN BB 3000 3 17 59364412 1049 134981 Download (58M, fcf13e7f3bbac600654587bfbfc7e616)
PromethION EVEN BB 5000 3 23 54989994 1168 130507 Download (53M, 1297d348bbaefc9684bc671b5a5380c4)
25PromethION LOG BB 5000 3 21 29089969 539 130258 Download (29M, 2ed4ea904e0666890712190281a63c7a)
GridION EVEN BB 0 3 21 62593096 1555 128873 Download (61M, 6c0f319e45e6a256b55d0d2a09a78a40)
GridION EVEN BB 0 3 17 60853714 1191 128723 Download (59M, 7e1c6cee84ec8fcedf29c4fff7a9c1ac)
GridION EVEN BB 5000 2 21 54939884 1338 125240 Download (53M, 0c3f1caa2a16193b063eb2177d3a582f)
GridION EVEN BB 0 3 23 62460840 1606 117670 Download (61M, 0d926f0c4103373de72a8fef8d6d589b)
25PromethION LOG BB 5000 3 23 29470357 576 113581 Download (29M, ff436432149e101575e43a2690447b2c)
GridION EVEN BB 5000 3 13 52284268 1042 109600 Download (51M, e0c99e2ee935bcfdf3c93a13c9c8ed8c)
PromethION EVEN BB 5000 2 17 44057992 1670 104009 Download (43M, 5f0b2da399f0c398117fe0f8bd828d2a)
GridION LOG BB 0 3 17 24779684 689 86606 Download (24M, f79b01947482da21de84c3592ab6cde3)
GridION EVEN BB 0 2 21 63869445 1898 80923 Download (62M, 7dbc906859534e5207d885df1fe50ea5)
GridION EVEN BB 0 2 23 63786112 2046 72175 Download (62M, 07340b02edfad7e5d2b7a49af34b38b7)
PromethION EVEN BB 8000 2 23 57139951 1969 61350 Download (56M, 871b5a6b4806e69bf92f09d99d195dd1)